\r\nmap "http://smart.who.int/icvp/StructureMap/ICVPLMToIPS" = "ICVPLMToIPS"\r\n\r\nuses "http://smart.who.int/icvp/StructureDefinition/ICVP" alias ICVPLogicalModel as source\r\nuses "http://hl7.org/fhir/StructureDefinition/Bundle" alias IPS as target\r\n\r\n// uses "http://smart.who.int/icvp/ConceptMap/ICVPProductIdToVaccineType" alias ICVPProductIdToVaccineType as conceptmap\r\n// create Bundle\r\ngroup ICVPLMToIPS(source lm : ICVPLogicalModel, target ips : IPS) {\r\n lm -> ips.type = 'document' "setIPSType";\r\n lm -> uuid() as bid, ips.identifier as id, id.value = bid, id.system = 'urn:oid:2.16.724.4.8.10.200.10' "setId";\r\n lm -> uuid() as cid, uuid() as pid, uuid() as mid, uuid() as aid, uuid() as proid, uuid() as immid then {\r\n lm -> ips.entry as entry, entry.resource = create('Composition') as composition, entry.fullUrl = append('urn:uuid:', cid) then {\r\n lm then LmToComposition(lm, ips, composition, cid, pid, mid, aid, proid, immid) "setLmToComposition";\r\n lm -> ips.entry as entry, entry.fullUrl = append('urn:uuid:', pid), create('Patient') as patient then {\r\n lm then DemographicsToPatient(lm, patient, pid) "createPatient";\r\n lm -> entry.resource = patient "setPatientEntry";\r\n } "mapPatientResource";\r\n lm.issuer as issuer then {\r\n issuer.reference as id -> ips.entry as entry, entry.fullUrl = append('urn:uuid:', id), create('Organization') as organization then {\r\n lm -> organization then createAuthor(issuer, organization) "createOrganization";\r\n lm -> entry.resource = organization "setOrganizationEntry";\r\n } "mapOrganizationResource";\r\n } "ss";\r\n } "mapCompositionResource";\r\n } "setEntries";\r\n}\r\n\r\n// create Composition\r\ngroup LmToComposition(source lm : ICVPLogicalModel, target ips : Bundle, target composition : Composition, source cid, source pid, source mid, source aid, source proid, source immid) {\r\n cid -> composition.id = cid "setCid";\r\n lm -> composition.status = 'final' "setStatus";\r\n lm -> composition.title = 'International Patient Summary' "setTitle";\r\n lm -> create('Coding') as coding, coding.code = '60591-5', coding.system = 'http://loinc.org', create('CodeableConcept') as code, code.coding = coding, composition.type = code "setType";\r\n lm -> composition.subject as subject then {\r\n lm -> subject.reference = append('urn:uuid:', pid) "setSubject";\r\n } "setSubject";\r\n lm.issuer as issuer then {\r\n issuer.reference as id -> composition.author as author then {\r\n id -> author.reference = append('urn:uuid:', id) "setAuthor";\r\n } "setauthr";\r\n } "setid";\r\n lm -> composition.section as medication then createSectionMedications(lm, medication, mid) "createMedication";\r\n lm -> composition.section as allergies then createSectionAllergies(lm, allergies, aid) "createAllergies";\r\n lm -> composition.section as problems then createSectionProblems(lm, problems, proid) "createProblems";\r\n lm then createSectionImmunizations(lm, ips, composition, immid, pid) "createImmunizations";\r\n}\r\n\r\n// create Patient\r\ngroup DemographicsToPatient(source lm : ICVPLogicalModel, target patient : Patient, source pid) {\r\n pid -> patient.id = pid "setPatientId";\r\n lm.name as sourceName -> patient.name as targetName then nameToHumanName(sourceName, targetName) "Setname";\r\n lm.dob as dob -> patient.birthDate = dob "setDateofBirth";\r\n lm.sex as sex then ExtractGender(sex, patient) "PatientGender";\r\n // lm.sex as sex -> patient.gender = sex "setSex";\r\n lm.nid as id -> patient.identifier as identifier, identifier.value = id "setNationalIdentifier";\r\n lm.guardian as guardian -> patient.contact as parentContact, parentContact.name as parentName then nameToHumanName(guardian, parentName) "setGuardianName";\r\n}\r\n\r\n// deals with short and case sensitive codes\r\ngroup ExtractGender(source sex, target patient : Patient) {\r\n sex where (sex = 'M') -> patient.gender = 'male' "setMale";\r\n sex where (sex = 'F') -> patient.gender = 'female' "setFemale";\r\n sex where (sex = 'm') -> patient.gender = 'male' "setMale";\r\n sex where (sex = 'f') -> patient.gender = 'female' "setFemale";\r\n sex where (sex = 'Male') -> patient.gender = 'male' "setMale";\r\n sex where (sex = 'Female') -> patient.gender = 'female' "setFemale";\r\n sex where (sex = 'male') -> patient.gender = 'male' "setMale";\r\n sex where (sex = 'female') -> patient.gender = 'female' "setFemale";\r\n}\r\n\r\n// create author\r\ngroup createAuthor(source issuer, target org : Organization) {\r\n issuer.reference as id -> org.id = id "setID";\r\n}\r\n\r\n// create sectionMedications\r\ngroup createSectionMedications(source lm : ICVPLogicalModel, target med : BackboneElement, source mid) {\r\n mid -> med.id = mid "setmedicationid";\r\n lm -> med.title = 'Medication Summary Section' "setMedicationTitle";\r\n lm -> med.text as text then generateNarrativeText(med, text) "setText";\r\n lm -> create('Coding') as coding, coding.code = '10160-0', coding.system = 'http://loinc.org', create('CodeableConcept') as code, code.coding = coding, med.code = code "setCode";\r\n lm -> create('Coding') as coding, coding.code = 'unavailable', coding.system = 'http://terminology.hl7.org/CodeSystem/list-empty-reason', create('CodeableConcept') as code, code.coding = coding, med.emptyReason = code "setCode";\r\n}\r\n\r\n// create sectionAllergies\r\ngroup createSectionAllergies(source lm : ICVPLogicalModel, target all : BackboneElement, source aid) {\r\n aid -> all.id = aid "setAllergyId";\r\n lm -> all.title = 'Allergies Section' "setAllergyTitle";\r\n lm -> all.text as text then generateNarrativeText(all, text) "setText";\r\n lm -> create('Coding') as coding, coding.code = '48765-2', coding.system = 'http://loinc.org', create('CodeableConcept') as code, code.coding = coding, all.code = code "setCode";\r\n lm -> create('Coding') as coding, coding.code = 'unavailable', coding.system = 'http://terminology.hl7.org/CodeSystem/list-empty-reason', create('CodeableConcept') as code, code.coding = coding, all.emptyReason = code "setCode";\r\n}\r\n\r\n// create sectionProblems\r\ngroup createSectionProblems(source lm : ICVPLogicalModel, target prb : BackboneElement, source proid) {\r\n proid -> prb.id = proid "setProblemsId";\r\n lm -> prb.title = 'Problems Section' "setProblemTitle";\r\n lm -> prb.text as text then generateNarrativeText(prb, text) "setText";\r\n lm -> create('Coding') as coding, coding.code = '11450-4', coding.system = 'http://loinc.org', create('CodeableConcept') as code, code.coding = coding, prb.code = code "setCode";\r\n lm -> create('Coding') as coding, coding.code = 'unavailable', coding.system = 'http://terminology.hl7.org/CodeSystem/list-empty-reason', create('CodeableConcept') as code, code.coding = coding, prb.emptyReason = code "setCode";\r\n}\r\n\r\n// create sectionImmunizations\r\ngroup createSectionImmunizations(source lm : ICVPLogicalModel, target bundle : Bundle, target composition : Composition, source immid, source pid) {\r\n lm -> composition.section as imm then {\r\n immid -> imm.id = immid "setImmunizationsId";\r\n lm -> imm.title = 'Immunizations Section' "setImmunizationTitle";\r\n lm -> imm.text as text then generateNarrativeText(imm, text) "setText";\r\n lm -> create('Coding') as coding, coding.code = '11369-6', coding.system = 'http://loinc.org', create('CodeableConcept') as code, code.coding = coding, imm.code = code "setCode";\r\n lm.vaccineDetails as vax -> uuid() as id, bundle.entry as entry, entry.fullUrl = append('urn:uuid:', id), imm.entry as sectionEntry, sectionEntry.reference = append('urn:uuid:', id), entry.resource = create('Immunization') as immunization, immunization.id = id then createImmunizationResource(vax, immunization, pid) "setImmz";\r\n } "set";\r\n}\r\n\r\ngroup createImmunizationResource(source vax : vaccineDetails, target immunization : Immunization, source pid) {\r\n vax -> immunization.status = 'completed' "setStatus";\r\n vax.productID as vaccine then {\r\n // Keep the original productID as-is in the extension\r\n vaccine -> immunization.extension as ext, ext.url = 'http://smart.who.int/pcmt/StructureDefinition/ProductID', ext.value = vaccine "keepProductIdExt";\r\n // Normalize system just for translate(): CM source = .../PreQualProductIds (camel 'Ids')\r\n vaccine.code as pcode -> create('Coding') as src, src.system = 'http://smart.who.int/pcmt-vaxprequal/CodeSystem/PreQualProductIds', src.code = pcode, create('Coding') as vcoding, vcoding.system = 'http://smart.who.int/pcmt-vaxprequal/CodeSystem/PreQualVaccineType', vcoding.code = translate(src, 'http://smart.who.int/icvp/ConceptMap/ICVPProductIdToVaccineType', 'code'), create('CodeableConcept') as tgtVaccineCode, tgtVaccineCode.coding = vcoding, immunization.vaccineCode = tgtVaccineCode "mapVaxCode";\r\n } "setVaccine";\r\n vax.date as date -> immunization.occurrence = append(date, 'T00:00:00.000Z') "setDate";\r\n vax.batchNo as batchNo then {\r\n batchNo.text as text -> immunization.lotNumber = text "setBatchNoFromText";\r\n } "setBatchNo";\r\n vax -> immunization.protocolApplied as protocol then {\r\n vax.disease as disease -> create('CodeableConcept') as code, code.coding = disease, protocol.targetDisease = code "setTargetDisease";\r\n } "setProtocolApplied";\r\n vax -> immunization.patient as subject, subject.reference = append('urn:uuid:', pid) "setSubject";\r\n vax.manufacturerId as maId -> create('Reference') as maRef, maRef.identifier = maId, immunization.manufacturer = maRef "setManufacturer";\r\n}\r\n\r\n// helper function\r\ngroup generateNarrativeText(source src : Section, target text : string) {\r\n src -> text.status = 'empty' "setstatus";\r\n src -> text.div = '<div xmlns=\\"http://www.w3.org/1999/xhtml\\">Narrative not available</div>' "setdiv";\r\n}\r\n\r\ngroup nameToHumanName(source sourceName, target targetName : HumanName) {\r\n sourceName as patientName -> targetName.text = patientName "PatientName";\r\n}\r\n\r\ngroup humanNameToHumanName(source sourceName, target targetName : HumanName) {\r\n sourceName.use as use -> targetName.use = use "CopyUse";\r\n sourceName.text as text -> targetName.text = text "CopyText";\r\n sourceName.family as family -> targetName.family = family "CopyFamily";\r\n sourceName.given as given -> targetName.given = given "CopyGiven";\r\n sourceName.prefix as prefix -> targetName.prefix = prefix "CopyPrefix";\r\n sourceName.suffix as suffix -> targetName.suffix = suffix "CopySuffix";\r\n // Copy the period using the previously defined group function\r\n sourceName.period as sourcePeriod -> targetName.period as targetPeriod then {\r\n sourcePeriod then periodToPeriod(sourcePeriod, targetPeriod) "CopyPeriod";\r\n } "copyPeriod";\r\n}\r\n\r\ngroup periodToPeriod(source sourcePeriod, target targetPeriod : Period) {\r\n sourcePeriod.start as start -> targetPeriod.start = start "setPeriodStart";\r\n sourcePeriod.end as end -> targetPeriod.end = end "setPeriodEnd";\r\n}\r\n\r\n "
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